[med-svn] r19529 - trunk/packages/bowtie/trunk/debian/patches

[Andreas Tille]

Author: tille
Date: 2015-07-05 19:24:10 +0000 (Sun, 05 Jul 2015)
New Revision: 19529

Modified:
   trunk/packages/bowtie/trunk/debian/patches/ppc64el.patch
Log:
Adapt patch + DEP3


Modified: trunk/packages/bowtie/trunk/debian/patches/ppc64el.patch
===================================================================
--- trunk/packages/bowtie/trunk/debian/patches/ppc64el.patch	2015-07-05 19:05:34 UTC (rev 19528)
+++ trunk/packages/bowtie/trunk/debian/patches/ppc64el.patch	2015-07-05 19:24:10 UTC (rev 19529)
@@ -1,8 +1,11 @@
-Index: bowtie-1.1.1/Makefile
-===================================================================
---- bowtie-1.1.1.orig/Makefile
-+++ bowtie-1.1.1/Makefile
-@@ -4,7 +4,7 @@
+Author: Fernando Seiti Furusato <ferseiti at br.ibm.com>
+Last-Update: Fri, 12 Jun 2015 14:39:07 UTC
+Bug-Debian: http://bugs.debian.org/788537
+Description: enable for ppc64el
+
+--- a/Makefile
++++ b/Makefile
+@@ -7,7 +7,7 @@ bindir = $(prefix)/bin
  
  SEQAN_DIR = /usr/include/seqan
  SEQAN_INC = -I $(SEQAN_DIR)
@@ -11,16 +14,16 @@
  CPP = g++
  CXX = $(CPP)
  CC = gcc
-@@ -42,7 +42,7 @@ ifneq (,$(findstring Darwin,$(shell unam
+@@ -43,7 +43,7 @@ endif
+ MACOS = 0
+ ifneq (,$(findstring Darwin,$(shell uname)))
      MACOS = 1
- endif
- 
--ifneq (,$(findstring 13,$(shell uname -r)))
-+ifneq (,$(findstring 12,$(shell uname -r)))
- 	CPP = clang++
- 	CC = clang
- 	EXTRA_FLAGS += -stdlib=libstdc++
-@@ -75,11 +75,11 @@ else
+-	ifneq (,$(findstring 13,$(shell uname -r)))
++	ifneq (,$(findstring 12,$(shell uname -r)))
+ 		CPP = clang++
+ 		CC = clang
+ 		EXTRA_FLAGS += -stdlib=libstdc++
+@@ -82,11 +82,11 @@ else
      PTHREAD_LIB = -lpthread
  endif
  
@@ -37,7 +40,7 @@
  
  PREFETCH_LOCALITY = 2
  PREF_DEF = -DPREFETCH_LOCALITY=$(PREFETCH_LOCALITY)
-@@ -108,7 +108,7 @@ SEARCH_FRAGMENTS = $(wildcard search_*_p
+@@ -125,7 +125,7 @@ SEARCH_FRAGMENTS = $(wildcard search_*_p
  VERSION = $(shell cat VERSION)
  
  BITS=32