[med-svn] [bwa] 02/02: Fix spelling and upload to unstable

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository bwa.

commit 831f28f970dca3d200eb818fed7fbc1de71c8ce9
Author: Andreas Tille <tille at debian.org>
Date:   Sun Jul 12 15:05:06 2015 +0200

    Fix spelling and upload to unstable
---
 debian/changelog              |  5 +++--
 debian/patches/series         |  1 +
 debian/patches/spelling.patch | 15 +++++++++++++++
 3 files changed, 19 insertions(+), 2 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 3b97018..afb8568 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,9 +1,10 @@
-bwa (0.7.12-4) UNRELEASED; urgency=medium
+bwa (0.7.12-4) unstable; urgency=medium
 
   * Check exact number of arguments of bwtupdate
     Closes: #715703
+  * Fix minor spelling issue
 
- -- Andreas Tille <tille at debian.org>  Sun, 12 Jul 2015 14:59:23 +0200
+ -- Andreas Tille <tille at debian.org>  Sun, 12 Jul 2015 15:04:54 +0200
 
 bwa (0.7.12-3) unstable; urgency=medium
 
diff --git a/debian/patches/series b/debian/patches/series
index f51a3dd..ea8465e 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
 fix_build_on_freebsd.patch
 check_number_of_arguments.patch
+spelling.patch
diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch
new file mode 100644
index 0000000..5d8b73e
--- /dev/null
+++ b/debian/patches/spelling.patch
@@ -0,0 +1,15 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Sun, 12 Jul 2015 14:59:23 +0200
+Description: Fix spelling
+
+--- a/fastmap.c
++++ b/fastmap.c
+@@ -259,7 +259,7 @@ int main_mem(int argc, char *argv[])
+ 		fprintf(stderr, "       -E INT[,INT]  gap extension penalty; a gap of size k cost '{-O} + {-E}*k' [%d,%d]\n", opt->e_del, opt->e_ins);
+ 		fprintf(stderr, "       -L INT[,INT]  penalty for 5'- and 3'-end clipping [%d,%d]\n", opt->pen_clip5, opt->pen_clip3);
+ 		fprintf(stderr, "       -U INT        penalty for an unpaired read pair [%d]\n\n", opt->pen_unpaired);
+-		fprintf(stderr, "       -x STR        read type. Setting -x changes multiple parameters unless overriden [null]\n");
++		fprintf(stderr, "       -x STR        read type. Setting -x changes multiple parameters unless overridden [null]\n");
+ 		fprintf(stderr, "                     pacbio: -k17 -W40 -r10 -A1 -B1 -O1 -E1 -L0  (PacBio reads to ref)\n");
+ 		fprintf(stderr, "                     ont2d: -k14 -W20 -r10 -A1 -B1 -O1 -E1 -L0  (Oxford Nanopore 2D-reads to ref)\n");
+ 		fprintf(stderr, "                     intractg: -B9 -O16 -L5  (intra-species contigs to ref)\n");

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bwa.git