[med-svn] [mauve-aligner] annotated tag upstream/2.4.0+4734 created (now 559d87b)

[Andreas Tille]

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tille pushed a change to annotated tag upstream/2.4.0+4734
in repository mauve-aligner.

        at  559d87b   (tag)
   tagging  19372cb6fb8bc3e46383e62e9fc2d28e7150ba94 (commit)
 tagged by  Andreas Tille
        on  Thu Jul 16 17:03:03 2015 +0200

- Log -----------------------------------------------------------------
Upstream version 2.4.0+4734

Andreas Tille (44):
      Lets start with mauve (not working yet)
      Strip precompiled binaries from upstram source
      Fix Vcs fields globally in all remaining packages because I'm bored by warnings in logfiles when investigating machine readable files of not yet uploaded packages
      Update packaging
      Add citation
      Update packaging
      Several changes to prepare Mauve.  The plan is to move it to Git anyway
      Drop some JARs
      Leave wrapper script as example in download archive
      Imported Upstream version 2.4.0+4734
      Merge tag 'upstream/2.4.0+4734'
      Re-add debian/ dir that was lost after git-import-orig ( :-( )
      Try to use libzeus-jscl-java which was just created in pkg-java Git but this does not seem to work :-(
      Vcs fields now point to git
      Try to get rid of biojava copy.  ATTENTION: The copy is from 1.9.2-SNAPSHOT, while Debian has only 1.7.x !!!!  (the zeus-jscl attempt was reverted in a separate patch)
      Imported Upstream version 2.4.0+4734
      Imported Upstream version 2.4.0+4734
      Merge tag 'upstream/2.4.0+4734'
      The bytecode*.jar was not really libbytecode-java but rather a part of biojava - dropped this in favour of biojava.jar
      Adapt to latest zeus-jscl
      Re-add Build-Depends libzeus-jscl-java
      set zeus-jscl in .classpath
      Thanks to the hints of Markus Koschany get something that builds and starts up ...
      Imported Upstream version 2.4.0+4734
      Imported Upstream version 2.4.0+4734
      Merge tag 'upstream/2.4.0+4734'
      Replace jnlp by icedtea-netx-common
      Imported Upstream version 2.4.0+4734
      Merge tag 'upstream/2.4.0+4734'
      Remove appbundler
      Delete cut-n-pasto
      Delete cut-n-pasto
      Imported Upstream version 2.4.0+4734
      Merge tag 'upstream/2.4.0+4734'
      We can also replace unix-0.5.jar
      Imported Upstream version 2.4.0+4734
      Merge tag 'upstream/2.4.0+4734'
      JSC seems to be not used at all
      There is one single reference to /usr/share/java/postgresql-jdbc4.jar so the postgresql jdbc driver is added to recommends
      Remove dependency from jebl.jar as suggested by upstream
      Imported Upstream version 2.4.0+4734
      Imported Upstream version 2.4.0+4734
      Imported Upstream version 2.4.0+4734
      Imported Upstream version 2.4.0+4734

Nelson A. de Oliveira (1):
      s/Debian-Med/Debian Med

Thorsten Alteholz (1):
      set mergeWithUpstream 1 for svn-buildpackage

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