[med-svn] [python-ruffus] branch master updated (38a066a -> 02a7884)
Andreas Tille
tille at debian.org
Fri Jul 17 21:04:38 UTC 2015
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository python-ruffus.
from 38a066a Add README.test and upload to new
new 65b49ab Imported Upstream version 2.6.3+dfsg
new c3e0b98 Merge tag 'upstream/2.6.3+dfsg'
new 02a7884 New upstream version, adapted patches
The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
PKG-INFO | 2 +-
README.rst | 127 ++++
debian/changelog | 6 +
debian/patches/fix_test.patch | 155 +----
debian/patches/run_test_executable.patch | 182 ------
debian/patches/series | 1 -
doc/_build/latex/ruffus.pdf | Bin 4688129 -> 4690982 bytes
doc/history.rst | 22 +-
doc/implementation_notes.rst | 27 -
doc/static_data/ruffus.pdf | Bin 4688129 -> 4690982 bytes
doc/todo.rst | 50 +-
doc/tutorials/new_syntax_worked_example_code.rst | 186 ++++--
ruffus/drmaa_wrapper.py | 87 ++-
ruffus/file_name_parameters.py | 35 +-
ruffus/proxy_logger.py | 45 --
ruffus/ruffus_exceptions.py | 4 +
ruffus/ruffus_utility.py | 64 +-
ruffus/ruffus_version.py | 2 +-
ruffus/task.py | 642 ++++++++++++---------
.../auto_generated_pipeline_examples/parallel.py | 228 --------
.../auto_generated_pipeline_examples/simple.py | 253 --------
.../auto_generated_pipeline_examples/simpler.py | 269 ---------
ruffus/test/complicated_example.py | 6 +-
.../create_test_script_from_dependency_tree.py | 3 +-
ruffus/test/manual_test_ctrl_c_exceptions.py | 2 +-
ruffus/test/play_with_colours.py | 3 +-
ruffus/test/run_all_unit_tests.cmd | 93 +++
ruffus/test/run_all_unit_tests3.cmd | 93 +++
ruffus/test/simpler.py | 234 --------
ruffus/test/simpler_with_shared_logging.py | 9 +-
ruffus/test/slow_process_for_testing.py | 22 +
ruffus/test/test_N_x_M_and_collate.py | 27 +-
ruffus/test/test_active_if.py | 23 +-
ruffus/test/test_branching_dependencies.py | 22 +-
ruffus/test/test_cmdline.py | 20 +-
ruffus/test/test_collate.py | 17 +-
ruffus/test/test_combinatorics.py | 160 +++--
ruffus/test/test_drmaa_wrapper_run_job_locally.py | 86 +++
ruffus/test/test_empty_files_decorator.py | 14 +-
ruffus/test/test_exceptions.py | 9 +-
ruffus/test/test_file_name_parameters.py | 510 ++++++++--------
ruffus/test/test_files_decorator.py | 28 +-
ruffus/test/test_filesre_combine.py | 21 +-
ruffus/test/test_filesre_split_and_combine.py | 21 +-
ruffus/test/test_follows_mkdir.py | 32 +-
ruffus/test/test_graphviz.py | 18 +-
..._inputs_with_multiple_args_raising_exception.py | 31 +-
ruffus/test/test_job_completion_checksums.py | 86 ++-
ruffus/test/test_job_history_with_exceptions.py | 57 +-
ruffus/test/test_mkdir.py | 43 +-
ruffus/test/test_newstyle_combinatorics.py | 125 ++--
ruffus/test/test_newstyle_proxy.py | 39 +-
ruffus/test/test_newstyle_regex_error_messages.py | 37 +-
ruffus/test/test_pausing.py | 18 +-
ruffus/test/test_pipeline_printout_graph.py | 19 +-
ruffus/test/test_posttask_merge.py | 21 +-
ruffus/test/test_proxy_logger.py | 78 +++
ruffus/test/test_regex_error_messages.py | 39 +-
ruffus/test/test_ruffus_utility.py | 20 +-
.../test_ruffus_utility_parse_task_arguments.py | 51 +-
ruffus/test/test_runtime_data.py | 35 +-
ruffus/test/test_softlink_uptodate.py | 24 +-
ruffus/test/test_split_and_combine.py | 13 +-
ruffus/test/test_split_regex_and_collate.py | 25 +-
ruffus/test/test_split_subdivide_checkpointing.py | 24 +-
ruffus/test/test_subpipeline.py | 33 +-
..._subpipeline.py => test_subpipeline_cmdline.py} | 134 +++--
ruffus/test/test_suffix_output_dir.py | 204 ++++---
ruffus/test/test_task_file_dependencies.py | 16 +-
ruffus/test/test_task_misc.py | 7 +-
ruffus/test/test_transform_add_inputs.py | 8 +-
ruffus/test/test_transform_formatter.py | 147 +++++
ruffus/test/test_transform_inputs.py | 19 +-
ruffus/test/test_transform_with_no_re_matches.py | 33 +-
ruffus/test/test_tutorial7.py | 44 +-
ruffus/test/test_unicode_filenames.py | 59 +-
ruffus/test/test_verbosity.py | 55 +-
ruffus/test/test_with_logger.py | 214 +++++++
78 files changed, 2672 insertions(+), 2946 deletions(-)
create mode 100644 README.rst
delete mode 100644 debian/patches/run_test_executable.patch
delete mode 100644 ruffus/test/auto_generated_pipeline_examples/parallel.py
delete mode 100644 ruffus/test/auto_generated_pipeline_examples/simple.py
delete mode 100644 ruffus/test/auto_generated_pipeline_examples/simpler.py
create mode 100755 ruffus/test/run_all_unit_tests.cmd
create mode 100755 ruffus/test/run_all_unit_tests3.cmd
delete mode 100644 ruffus/test/simpler.py
create mode 100644 ruffus/test/slow_process_for_testing.py
create mode 100755 ruffus/test/test_drmaa_wrapper_run_job_locally.py
create mode 100755 ruffus/test/test_proxy_logger.py
copy ruffus/test/{test_subpipeline.py => test_subpipeline_cmdline.py} (57%)
create mode 100755 ruffus/test/test_transform_formatter.py
create mode 100755 ruffus/test/test_with_logger.py
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