[med-svn] [r-bioc-edger] 04/05: Adapt patch

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-edger.

commit 225b55b332a405c5dc14443b35b0e999b5fda6f0
Author: Andreas Tille <tille at debian.org>
Date:   Sun Jul 19 22:47:16 2015 +0200

    Adapt patch
---
 debian/patches/do_not_attempt_locfit_test.patch | 23 +----------------------
 1 file changed, 1 insertion(+), 22 deletions(-)

diff --git a/debian/patches/do_not_attempt_locfit_test.patch b/debian/patches/do_not_attempt_locfit_test.patch
index fbab05c..6cbc775 100644
--- a/debian/patches/do_not_attempt_locfit_test.patch
+++ b/debian/patches/do_not_attempt_locfit_test.patch
@@ -38,28 +38,7 @@ Description: r-cran-locfit has a non-free license and thus can not be packaged
  group <- factor(c(1,1,2,2))
 --- a/tests/edgeR-Tests.Rout.save
 +++ b/tests/edgeR-Tests.Rout.save
-@@ -296,20 +296,6 @@ Loading required package: splines
-    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
-  0.1385  0.1792  0.1964  0.1935  0.2026  0.2709 
- > 
--> dglm2 <- estimateDisp(dglm, design)
--> summary(dglm2$tagwise.dispersion)
--   Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
-- 0.1766  0.1789  0.1814  0.1846  0.1870  0.2119 
--> dglm2 <- estimateDisp(dglm, design, prior.df=20)
--> summary(dglm2$tagwise.dispersion)
--   Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
-- 0.1527  0.1669  0.1814  0.1858  0.1951  0.2497 
--> dglm2 <- estimateDisp(dglm, design, robust=TRUE)
--Loading required package: statmod
--> summary(dglm2$tagwise.dispersion)
--   Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
-- 0.1766  0.1789  0.1814  0.1846  0.1870  0.2119 
--> 
- > # Continuous trend
- > nlibs <- 3
- > ntags <- 1000
-@@ -434,19 +420,6 @@ $AveLogCPM
+@@ -264,19 +264,6 @@ $AveLogCPM
  995 more elements ...
  
  > 

-- 
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