[med-svn] [python-dendropy] 04/06: Merge tag 'upstream/4.0.3'
Andreas Tille
tille at debian.org
Wed Jul 29 11:20:42 UTC 2015
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository python-dendropy.
commit 5d827337bec0fe59d1b35cfcd914be1190bfe9b7
Merge: 666c65d 9278860
Author: Andreas Tille <tille at debian.org>
Date: Wed Jul 29 12:26:42 2015 +0200
Merge tag 'upstream/4.0.3'
Upstream version 4.0.3
CHANGES.rst | 15 +-
DendroPy.egg-info/PKG-INFO | 23 +-
DendroPy.egg-info/SOURCES.txt | 463 +
LICENSE.rst | 104 +-
MANIFEST.in | 1 +
PKG-INFO | 23 +-
README.rst | 19 +
applications/sumtrees/sumtrees.py | 25 +-
dendropy/__init__.py | 8 +-
dendropy/__main__.py | 4 +-
dendropy/calculate/__init__.py | 4 +-
dendropy/calculate/mathfn.py | 4 +-
dendropy/calculate/popgenstat.py | 4 +-
dendropy/calculate/probability.py | 4 +-
dendropy/calculate/statistics.py | 4 +-
dendropy/calculate/treecompare.py | 4 +-
dendropy/calculate/treemeasure.py | 4 +-
dendropy/calculate/treescore.py | 5 +-
dendropy/calculate/treesum.py | 4 +-
dendropy/dataio/__init__.py | 4 +-
dendropy/dataio/fastareader.py | 4 +-
dendropy/dataio/fastawriter.py | 4 +-
dendropy/dataio/ioservice.py | 4 +-
dendropy/dataio/newick.py | 4 +-
dendropy/dataio/newickreader.py | 4 +-
dendropy/dataio/newickwriter.py | 4 +-
dendropy/dataio/newickyielder.py | 4 +-
dendropy/dataio/nexmlreader.py | 4 +-
dendropy/dataio/nexmlwriter.py | 4 +-
dendropy/dataio/nexmlyielder.py | 4 +-
dendropy/dataio/nexusprocessing.py | 5 +-
dendropy/dataio/nexusreader.py | 5 +-
dendropy/dataio/nexuswriter.py | 10 +-
dendropy/dataio/nexusyielder.py | 4 +-
dendropy/dataio/phylipreader.py | 4 +-
dendropy/dataio/phylipwriter.py | 4 +-
dendropy/dataio/tokenizer.py | 4 +-
dendropy/dataio/xmlprocessing.py | 4 +-
dendropy/datamodel/__init__.py | 4 +-
dendropy/datamodel/basemodel.py | 4 +-
dendropy/datamodel/charmatrixmodel.py | 8 +-
dendropy/datamodel/charstatemodel.py | 4 +-
dendropy/datamodel/datasetmodel.py | 4 +-
dendropy/datamodel/taxonmodel.py | 4 +-
dendropy/datamodel/treecollectionmodel.py | 17 +-
dendropy/datamodel/treemodel.py | 12 +-
dendropy/interop/__init__.py | 4 +-
dendropy/interop/ape.py | 4 +-
dendropy/interop/biopython.py | 4 +-
dendropy/interop/entrez.py | 4 +-
dendropy/interop/ete.py | 4 +-
dendropy/interop/gbif.py | 4 +-
dendropy/interop/genbank.py | 4 +-
dendropy/interop/muscle.py | 4 +-
dendropy/interop/paup.py | 6 +-
dendropy/interop/raxml.py | 4 +-
dendropy/interop/rstats.py | 22 +-
dendropy/interop/seqgen.py | 4 +-
dendropy/legacy/__init__.py | 4 +-
dendropy/legacy/coalescent.py | 4 +-
dendropy/legacy/continuous.py | 4 +-
dendropy/legacy/ncbi.py | 4 +-
dendropy/legacy/popgensim.py | 4 +-
dendropy/legacy/popgenstat.py | 4 +-
dendropy/legacy/reconcile.py | 4 +-
dendropy/legacy/seqmodel.py | 4 +-
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dendropy/legacy/treemanip.py | 4 +-
dendropy/legacy/treesim.py | 4 +-
dendropy/legacy/treesplit.py | 4 +-
dendropy/legacy/treesum.py | 4 +-
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...lse.use-tree-weights-True.burnin-150.splits.txt | 90 +
...None.use-tree-weights-False.burnin-0.splits.txt | 104 +
...ne.use-tree-weights-False.burnin-150.splits.txt | 90 +
...-None.use-tree-weights-None.burnin-0.splits.txt | 104 +
...one.use-tree-weights-None.burnin-150.splits.txt | 90 +
...-None.use-tree-weights-True.burnin-0.splits.txt | 104 +
...one.use-tree-weights-True.burnin-150.splits.txt | 90 +
...True.use-tree-weights-False.burnin-0.splits.txt | 104 +
...ue.use-tree-weights-False.burnin-150.splits.txt | 90 +
...-True.use-tree-weights-None.burnin-0.splits.txt | 104 +
...rue.use-tree-weights-None.burnin-150.splits.txt | 90 +
...-True.use-tree-weights-True.burnin-0.splits.txt | 104 +
...rue.use-tree-weights-True.burnin-150.splits.txt | 90 +
...alse.use-tree-weights-False.burnin-0.splits.txt | 104 +
...se.use-tree-weights-False.burnin-150.splits.txt | 90 +
...False.use-tree-weights-None.burnin-0.splits.txt | 104 +
...lse.use-tree-weights-None.burnin-150.splits.txt | 90 +
...False.use-tree-weights-True.burnin-0.splits.txt | 104 +
...lse.use-tree-weights-True.burnin-150.splits.txt | 90 +
...None.use-tree-weights-False.burnin-0.splits.txt | 104 +
...ne.use-tree-weights-False.burnin-150.splits.txt | 90 +
...-None.use-tree-weights-None.burnin-0.splits.txt | 104 +
...one.use-tree-weights-None.burnin-150.splits.txt | 90 +
...-None.use-tree-weights-True.burnin-0.splits.txt | 104 +
...one.use-tree-weights-True.burnin-150.splits.txt | 90 +
...True.use-tree-weights-False.burnin-0.splits.txt | 104 +
...ue.use-tree-weights-False.burnin-150.splits.txt | 90 +
...-True.use-tree-weights-None.burnin-0.splits.txt | 104 +
...rue.use-tree-weights-None.burnin-150.splits.txt | 90 +
...-True.use-tree-weights-True.burnin-0.splits.txt | 104 +
...rue.use-tree-weights-True.burnin-150.splits.txt | 90 +
...alse.use-tree-weights-False.burnin-0.splits.txt | 104 +
...se.use-tree-weights-False.burnin-150.splits.txt | 90 +
...False.use-tree-weights-None.burnin-0.splits.txt | 104 +
...lse.use-tree-weights-None.burnin-150.splits.txt | 90 +
...False.use-tree-weights-True.burnin-0.splits.txt | 104 +
...lse.use-tree-weights-True.burnin-150.splits.txt | 90 +
...None.use-tree-weights-False.burnin-0.splits.txt | 104 +
...ne.use-tree-weights-False.burnin-150.splits.txt | 90 +
...-None.use-tree-weights-None.burnin-0.splits.txt | 104 +
...one.use-tree-weights-None.burnin-150.splits.txt | 90 +
...-None.use-tree-weights-True.burnin-0.splits.txt | 104 +
...one.use-tree-weights-True.burnin-150.splits.txt | 90 +
...True.use-tree-weights-False.burnin-0.splits.txt | 104 +
...ue.use-tree-weights-False.burnin-150.splits.txt | 90 +
...-True.use-tree-weights-None.burnin-0.splits.txt | 104 +
...rue.use-tree-weights-None.burnin-150.splits.txt | 90 +
...-True.use-tree-weights-True.burnin-0.splits.txt | 104 +
...rue.use-tree-weights-True.burnin-150.splits.txt | 90 +
...alse.use-tree-weights-False.burnin-0.splits.txt | 379 +
...False.use-tree-weights-None.burnin-0.splits.txt | 379 +
...False.use-tree-weights-True.burnin-0.splits.txt | 379 +
...None.use-tree-weights-False.burnin-0.splits.txt | 507 +
...-None.use-tree-weights-None.burnin-0.splits.txt | 507 +
...-None.use-tree-weights-True.burnin-0.splits.txt | 507 +
...True.use-tree-weights-False.burnin-0.splits.txt | 507 +
...-True.use-tree-weights-None.burnin-0.splits.txt | 507 +
...-True.use-tree-weights-True.burnin-0.splits.txt | 507 +
...alse.use-tree-weights-False.burnin-0.splits.txt | 379 +
...False.use-tree-weights-None.burnin-0.splits.txt | 379 +
...False.use-tree-weights-True.burnin-0.splits.txt | 379 +
...None.use-tree-weights-False.burnin-0.splits.txt | 379 +
...-None.use-tree-weights-None.burnin-0.splits.txt | 379 +
...-None.use-tree-weights-True.burnin-0.splits.txt | 379 +
...True.use-tree-weights-False.burnin-0.splits.txt | 507 +
...-True.use-tree-weights-None.burnin-0.splits.txt | 507 +
...-True.use-tree-weights-True.burnin-0.splits.txt | 507 +
dendropy/test/data/trees/APG_Angiosperms.newick | 1 +
dendropy/test/data/trees/APG_Angiosperms.nexus | 1620 +
.../data/trees/Bininda-emonds_2007_mammals.newick | 3 +
.../data/trees/Bininda-emonds_2007_mammals.nexus | 4524 +
dendropy/test/data/trees/GEBA.tree.newick | 1 +
dendropy/test/data/trees/GEBA.tree.nexus | 1473 +
.../trees/Jetz_et_al_2012_Aves.sample.tree.newick | 1 +
.../trees/Jetz_et_al_2012_Aves.sample.tree.nexus | 10007 ++
.../test/data/trees/Smith_2001_angiosperms.newick | 1 +
.../test/data/trees/Smith_2001_angiosperms.nexus | 55490 ++++++++
dendropy/test/data/trees/apternodus.tre | 31 +
.../data/trees/bipartition_encoding_fixture.json | 1 +
dendropy/test/data/trees/bird_orders.newick | 1 +
dendropy/test/data/trees/bird_orders.nex | 72 +
.../data/trees/cetaceans.mb.no-clock.mcmc.trees | 306 +
.../cetaceans.mb.no-clock.mcmc.weighted-01.trees | 284 +
.../cetaceans.mb.no-clock.mcmc.weighted-02.trees | 284 +
.../cetaceans.mb.no-clock.mcmc.weighted-03.trees | 284 +
.../trees/cetaceans.mb.strict-clock.mcmc.trees | 306 +
...etaceans.mb.strict-clock.mcmc.weighted-01.trees | 284 +
...etaceans.mb.strict-clock.mcmc.weighted-02.trees | 284 +
...etaceans.mb.strict-clock.mcmc.weighted-03.trees | 284 +
.../data/trees/cetaceans.raxml.bootstraps.trees | 283 +
.../cetaceans.raxml.bootstraps.weighted-01.trees | 283 +
.../cetaceans.raxml.bootstraps.weighted-02.trees | 283 +
.../cetaceans.raxml.bootstraps.weighted-03.trees | 283 +
dendropy/test/data/trees/cetaceans.taxa.nex | 29 +
...ated-with-translate-block-and-internal-taxa.nex | 32 +
...o-taxa-block-and-untranslated-internal-taxa.nex | 26 +
...ated-with-translate-block-and-no-taxa-block.nex | 24 +
...nslate-block-and-untranslated-internal-taxa.nex | 33 +
dendropy/test/data/trees/deepcoal1.nex | 77 +
...test-trees-multifurcating-rooted-annotated.json | 36443 +++++
...st-trees-multifurcating-rooted-annotated.newick | 11 +
...est-trees-multifurcating-rooted-annotated.nexml | 15954 +++
...est-trees-multifurcating-rooted-annotated.nexus | 105 +
...g-rooted-annotated.nexus-metadata-comments.json | 1740 +
.../dendropy-test-trees-multifurcating-rooted.json | 16295 +++
...endropy-test-trees-multifurcating-rooted.newick | 10 +
...dendropy-test-trees-multifurcating-rooted.nexml | 1699 +
...dendropy-test-trees-multifurcating-rooted.nexus | 99 +
...endropy-test-trees-multifurcating-unrooted.json | 16358 +++
...dropy-test-trees-multifurcating-unrooted.newick | 10 +
...ndropy-test-trees-multifurcating-unrooted.nexml | 1705 +
...ndropy-test-trees-multifurcating-unrooted.nexus | 99 +
.../dendropy-test-trees-n10-rooted-treeshapes.json | 39401 ++++++
...endropy-test-trees-n10-rooted-treeshapes.newick | 98 +
...dendropy-test-trees-n10-rooted-treeshapes.nexml | 3945 +
...dendropy-test-trees-n10-rooted-treeshapes.nexus | 221 +
.../data/trees/dendropy-test-trees-n12-x2.json | 931 +
.../data/trees/dendropy-test-trees-n12-x2.newick | 2 +
.../data/trees/dendropy-test-trees-n12-x2.nexml | 119 +
.../data/trees/dendropy-test-trees-n12-x2.nexus | 31 +
...endropy-test-trees-n14-unrooted-treeshapes.json | 73580 ++++++++++
...dropy-test-trees-n14-unrooted-treeshapes.newick | 135 +
...ndropy-test-trees-n14-unrooted-treeshapes.nexml | 7319 +
...ndropy-test-trees-n14-unrooted-treeshapes.nexus | 299 +
...opy-test-trees-n33-unrooted-annotated-x10a.json | 29398 ++++
...y-test-trees-n33-unrooted-annotated-x10a.newick | 11 +
...py-test-trees-n33-unrooted-annotated-x10a.nexml | 12613 ++
...py-test-trees-n33-unrooted-annotated-x10a.nexus | 74 +
...ted-annotated-x10a.nexus-metadata-comments.json | 1389 +
.../dendropy-test-trees-n33-unrooted-x100a.json | 132405 ++++++++++++++++++
.../dendropy-test-trees-n33-unrooted-x100a.newick | 100 +
.../dendropy-test-trees-n33-unrooted-x100a.nexml | 13048 ++
.../dendropy-test-trees-n33-unrooted-x100a.nexus | 248 +
.../dendropy-test-trees-n33-unrooted-x10a.json | 13245 ++
.../dendropy-test-trees-n33-unrooted-x10a.newick | 10 +
.../dendropy-test-trees-n33-unrooted-x10a.nexml | 1348 +
.../dendropy-test-trees-n33-unrooted-x10a.nexus | 68 +
.../dendropy-test-trees-n33-unrooted-x10b.json | 13245 ++
.../dendropy-test-trees-n33-unrooted-x10b.newick | 10 +
.../dendropy-test-trees-n33-unrooted-x10b.nexml | 1348 +
.../dendropy-test-trees-n33-unrooted-x10b.nexus | 68 +
dendropy/test/data/trees/feb032009.splits.csv | 370 +
dendropy/test/data/trees/feb032009.trees.newick | 100 +
dendropy/test/data/trees/feb032009.trees.nexus | 229 +
dendropy/test/data/trees/hiv1.newick | 1 +
dendropy/test/data/trees/hiv1.nexus | 399 +
.../incomplete_leaves_rooted.dendropy-pruned.nex | 732 +
.../trees/incomplete_leaves_rooted.paup-pruned.nex | 732 +
.../trees/incomplete_leaves_rooted.pre-pruned.nex | 732 +
.../trees/incomplete_leaves_rooted.pruned_taxa.txt | 30 +
.../incomplete_leaves_rooted.retained_taxa.txt | 30 +
.../incomplete_leaves_unrooted.dendropy-pruned.nex | 732 +
.../incomplete_leaves_unrooted.paup-pruned.nex | 732 +
.../incomplete_leaves_unrooted.pre-pruned.nex | 732 +
.../incomplete_leaves_unrooted.pruned_taxa.txt | 30 +
.../incomplete_leaves_unrooted.retained_taxa.txt | 30 +
.../data/trees/issue_mth_2009-02-03.rooted.nexus | 229 +
.../data/trees/issue_mth_2009-02-03.unrooted.nexus | 229 +
dendropy/test/data/trees/maj-rule-bug1.trees.nexus | 229 +
dendropy/test/data/trees/maj-rule-bug2.trees.nexus | 233 +
dendropy/test/data/trees/multitreeblocks.nex | 28 +
dendropy/test/data/trees/multitreeblocks2.nex | 29 +
.../test/data/trees/primates.beast.mcct.meanh.tre | 37 +
.../data/trees/primates.beast.mcct.medianh.tre | 37 +
.../data/trees/primates.beast.mcct.noedgelens.tree | 25 +
dendropy/test/data/trees/primates.beast.mcmc.trees | 4037 +
dendropy/test/data/trees/primates.trees.nexus | 19 +
.../data/trees/prune_rooted.dendropy-pruned.nex | 732 +
.../test/data/trees/prune_rooted.paup-pruned.nex | 732 +
.../test/data/trees/prune_rooted.pre-pruned.nex | 732 +
.../test/data/trees/prune_rooted.pruned_taxa.txt | 30 +
.../test/data/trees/prune_rooted.retained_taxa.txt | 30 +
.../data/trees/prune_unrooted.dendropy-pruned.nex | 732 +
.../test/data/trees/prune_unrooted.paup-pruned.nex | 732 +
.../test/data/trees/prune_unrooted.pre-pruned.nex | 732 +
.../test/data/trees/prune_unrooted.pruned_taxa.txt | 30 +
.../data/trees/prune_unrooted.retained_taxa.txt | 30 +
.../test/data/trees/pythonidae.annotated.bad.nexml | 762 +
.../test/data/trees/pythonidae.annotated.nexml | 762 +
.../test/data/trees/pythonidae.beast.mcmc.trees | 1079 +
.../test/data/trees/pythonidae.beast.summary.tre | 79 +
dendropy/test/data/trees/pythonidae.mb.con | 85 +
dendropy/test/data/trees/pythonidae.mb.run1.t | 108 +
dendropy/test/data/trees/pythonidae.mb.run2.t | 108 +
dendropy/test/data/trees/pythonidae.mb.run3.t | 108 +
dendropy/test/data/trees/pythonidae.mb.run4.t | 108 +
.../test/data/trees/pythonidae.mlboots.newick.tre | 1001 +
.../test/data/trees/pythonidae.mlboots.nexus.tre | 1046 +
dendropy/test/data/trees/pythonidae.mle.newick | 1 +
dendropy/test/data/trees/pythonidae.mle.nex | 46 +
.../pythonidae.random.bd0301.midpoint-rooted.tre | 112 +
.../pythonidae.random.bd0301.randomly-rooted.tre | 145 +
.../test/data/trees/pythonidae.random.bd0301.tre | 143 +
.../data/trees/pythonidae.reference-trees.newick | 11 +
.../data/trees/pythonidae.reference-trees.nexus | 89 +
.../pythonidae.reference-trees.no-taxa-block.nexus | 50 +
...eference-trees.no-taxa-no-translate-block.nexus | 17 +
...nidae.reference-trees.taxon-numbers-only.newick | 11 +
dendropy/test/data/trees/rana.trees.nexus | 70 +
dendropy/test/data/trees/treebase_s373.xml | 634 +
dendropy/test/support/__init__.py | 19 +
dendropy/test/support/compare_and_validate.py | 4 +-
dendropy/test/support/coverage_analysis.py | 4 +-
dendropy/test/support/curated_dataset.py | 4 +-
dendropy/test/support/curated_test_tree.py | 4 +-
dendropy/test/support/curated_test_tree_list.py | 4 +-
dendropy/test/support/dendropytest.py | 4 +-
dendropy/test/support/mockrandom.py | 4 +-
dendropy/test/support/mockreader.py | 18 +
dendropy/test/support/pathmap.py | 7 +-
dendropy/test/support/paupsplitsreference.py | 4 +-
dendropy/test/support/standard_file_test_chars.py | 16 +
.../test/support/standard_file_test_datasets.py | 4 +-
dendropy/test/support/standard_file_test_trees.py | 4 +-
dendropy/test/test_asciitree.py | 4 +-
dendropy/test/test_birthdeath.py | 4 +-
dendropy/test/test_coalescent.py | 4 +-
.../test/test_container_frozen_ordered_dict.py | 4 +-
.../test/test_container_normalized_bitmask_dict.py | 4 +-
dendropy/test/test_container_ordered_set.py | 4 +-
dendropy/test/test_continuous.py | 4 +-
dendropy/test/test_dataio_basic_tree.py | 17 +
dendropy/test/test_dataio_fasta_reader.py | 4 +-
dendropy/test/test_dataio_fasta_writer.py | 4 +-
dendropy/test/test_dataio_newick_reader_rooting.py | 4 +-
dendropy/test/test_dataio_newick_reader_tree.py | 4 +-
.../test/test_dataio_newick_reader_tree_iter.py | 4 +-
.../test/test_dataio_newick_reader_tree_list.py | 4 +-
dendropy/test/test_dataio_newick_writer.py | 4 +-
dendropy/test/test_dataio_nexml_reader_chars.py | 4 +-
.../test/test_dataio_nexml_reader_tree_list.py | 4 +-
dendropy/test/test_dataio_nexml_writer_chars.py | 4 +-
dendropy/test/test_dataio_nexml_writer_trees.py | 4 +-
dendropy/test/test_dataio_nexus_reader_chars.py | 4 +-
dendropy/test/test_dataio_nexus_reader_dataset.py | 4 +-
.../test/test_dataio_nexus_reader_tree_list.py | 4 +-
dendropy/test/test_dataio_nexus_taxon_handling.py | 4 +-
dendropy/test/test_dataio_nexus_tree_yielder.py | 4 +-
dendropy/test/test_dataio_nexus_writer_chars.py | 4 +-
dendropy/test/test_dataio_nexus_writer_dataset.py | 4 +-
dendropy/test/test_dataio_nexus_writer_tree.py | 4 +-
.../test/test_dataio_nexus_writer_tree_list.py | 4 +-
dendropy/test/test_dataio_phylip_reader_chars.py | 4 +-
dendropy/test/test_dataio_phylip_writer_chars.py | 4 +-
dendropy/test/test_dataio_tokenizer.py | 4 +-
dendropy/test/test_datamodel_annotations.py | 4 +-
dendropy/test/test_datamodel_bipartitions.py | 4 +-
dendropy/test/test_datamodel_charmatrix.py | 4 +-
dendropy/test/test_datamodel_dataset.py | 4 +-
dendropy/test/test_datamodel_split_bitmasks.py | 225 +-
dendropy/test/test_datamodel_statealphabet.py | 4 +-
dendropy/test/test_datamodel_taxon.py | 4 +-
...model_tree_construction_copying_and_identity.py | 4 +-
.../test/test_datamodel_tree_edge_fundamentals.py | 4 +-
dendropy/test/test_datamodel_tree_list.py | 4 +-
.../test/test_datamodel_tree_node_fundamentals.py | 4 +-
.../test_datamodel_tree_structure_and_iteration.py | 4 +-
.../test/test_datamodel_tree_taxon_management.py | 4 +-
dendropy/test/test_datamodel_treearray.py | 4 +-
dendropy/test/test_fitch.py | 7 +-
dendropy/test/test_parsimony_scoring.py | 494 +
dendropy/test/test_paup.py | 4 +-
dendropy/test/test_popgenstat.py | 26 +-
dendropy/test/test_statistics.py | 4 +-
.../test/test_tree_calculations_and_metrics.py | 4 +-
dendropy/test/test_tree_from_splits.py | 4 +-
.../test/test_tree_operations_and_manipulations.py | 5 +-
.../test_tree_reconciliation_and_discordance.py | 24 +-
dendropy/test/test_tree_split_compatibility.py | 4 +-
.../test/test_tree_summarization_and_consensus.py | 4 +-
dendropy/utility/__init__.py | 4 +-
dendropy/utility/bibtex.py | 4 +-
dendropy/utility/bitprocessing.py | 4 +-
dendropy/utility/cli.py | 4 +-
dendropy/utility/constants.py | 4 +-
dendropy/utility/container.py | 4 +-
dendropy/utility/debug.py | 4 +-
dendropy/utility/deprecate.py | 4 +-
dendropy/utility/error.py | 4 +-
dendropy/utility/filesys.py | 4 +-
dendropy/utility/libexec/__init__.py | 5 +-
dendropy/utility/messaging.py | 4 +-
dendropy/utility/metavar.py | 4 +-
dendropy/utility/processio.py | 4 +-
dendropy/utility/terminal.py | 18 +
dendropy/utility/textprocessing.py | 7 +-
dendropy/utility/timeprocessing.py | 4 +-
dendropy/utility/urlio.py | 4 +-
dendropy/utility/vcsinfo.py | 4 +-
doc/source/license.inc | 20 +-
doc/source/programs/sumtrees.rst | 2 +-
setup.py | 4 +-
650 files changed, 605633 insertions(+), 833 deletions(-)
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