[med-svn] r19742 - in trunk/packages: . python-burrito python-burrito/trunk python-burrito/trunk/debian python-burrito/trunk/debian/patches python-burrito/trunk/debian/source
Andreas Tille
tille at moszumanska.debian.org
Wed Jul 29 12:36:30 UTC 2015
Author: tille
Date: 2015-07-29 12:36:30 +0000 (Wed, 29 Jul 2015)
New Revision: 19742
Added:
trunk/packages/python-burrito/
trunk/packages/python-burrito/trunk/
trunk/packages/python-burrito/trunk/debian/
trunk/packages/python-burrito/trunk/debian/changelog
trunk/packages/python-burrito/trunk/debian/compat
trunk/packages/python-burrito/trunk/debian/control
trunk/packages/python-burrito/trunk/debian/copyright
trunk/packages/python-burrito/trunk/debian/patches/
trunk/packages/python-burrito/trunk/debian/patches/better_error_reporting
trunk/packages/python-burrito/trunk/debian/patches/series
trunk/packages/python-burrito/trunk/debian/rules
trunk/packages/python-burrito/trunk/debian/source/
trunk/packages/python-burrito/trunk/debian/source/format
trunk/packages/python-burrito/trunk/debian/watch
Log:
Inject python-burrito as provided by BioLinux
Added: trunk/packages/python-burrito/trunk/debian/changelog
===================================================================
--- trunk/packages/python-burrito/trunk/debian/changelog (rev 0)
+++ trunk/packages/python-burrito/trunk/debian/changelog 2015-07-29 12:36:30 UTC (rev 19742)
@@ -0,0 +1,12 @@
+python-burrito (0.9.0-0biolinux3) trusty; urgency=medium
+
+ * Add missing build deps on dh_python, setuptools, nose
+
+ -- Tim Booth <tbooth at ceh.ac.uk> Mon, 02 Mar 2015 19:08:33 +0000
+
+python-burrito (0.9.0-0biolinux1) trusty; urgency=medium
+
+ * Initial release for QIIME 1.9
+ * Build for Python2 only just now.
+
+ -- Tim Booth <tbooth at ceh.ac.uk> Fri, 20 Feb 2015 18:10:56 +0000
Added: trunk/packages/python-burrito/trunk/debian/compat
===================================================================
--- trunk/packages/python-burrito/trunk/debian/compat (rev 0)
+++ trunk/packages/python-burrito/trunk/debian/compat 2015-07-29 12:36:30 UTC (rev 19742)
@@ -0,0 +1 @@
+9
Added: trunk/packages/python-burrito/trunk/debian/control
===================================================================
--- trunk/packages/python-burrito/trunk/debian/control (rev 0)
+++ trunk/packages/python-burrito/trunk/debian/control 2015-07-29 12:36:30 UTC (rev 19742)
@@ -0,0 +1,30 @@
+Source: python-burrito
+Section: python
+Priority: extra
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Tim Booth <tbooth at ceh.ac.uk>
+Build-Depends: debhelper (>= 9), python-all (>= 2.7), python-support, dh-python,
+ python-future,
+ python-setuptools,
+ python-nose
+Standards-Version: 3.9.6
+Homepage: https://github.com/biocore/burrito
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/python-burrito/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/python-burrito/trunk/
+
+Package: python-burrito
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}
+Description: framework for wrapping and controlling command-line applications
+ burrito, canonically pronounced boar-eee-toe, is a Python framework for
+ wrapping and controlling command-line applications.
+ .
+ This tool allows developers to wrap command-line applications, just as burritos
+ wrap delicious foods. Both hide the potentially unsightly details.
+ .
+ burrito is derived from the application controller framework code, which was
+ originally added to PyCogent and later moved to scikit-bio. The contributors
+ and/or copyright holders have agreed to make the code they wrote for PyCogent
+ available under the BSD license. The original authors of the application
+ controller framework code in PyCogent are Greg Caporaso (@gregcaporaso),
+ Sandra Smit, Micah Hamady, and Rob Knight (@rob-knight).
Added: trunk/packages/python-burrito/trunk/debian/copyright
===================================================================
--- trunk/packages/python-burrito/trunk/debian/copyright (rev 0)
+++ trunk/packages/python-burrito/trunk/debian/copyright 2015-07-29 12:36:30 UTC (rev 19742)
@@ -0,0 +1,35 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: burrito
+Upstream-Contact: gregcaporaso at gmail.com
+Source: https://github.com/biocore/burrito/
+
+Files: *
+Copyright: © burrito development team <gregcaporaso at gmail.com>
+License:
+ Copyright (c) 2014, burrito development team.
+ All rights reserved.
+
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+
+ * Redistributions of source code must retain the above copyright notice, this
+ list of conditions and the following disclaimer.
+
+ * Redistributions in binary form must reproduce the above copyright notice,
+ this list of conditions and the following disclaimer in the documentation
+ and/or other materials provided with the distribution.
+
+ * Neither the names burrito or biocore nor the names of its
+ contributors may be used to endorse or promote products derived from
+ this software without specific prior written permission.
+
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+ AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+ FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+ SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+ OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Added: trunk/packages/python-burrito/trunk/debian/patches/better_error_reporting
===================================================================
--- trunk/packages/python-burrito/trunk/debian/patches/better_error_reporting (rev 0)
+++ trunk/packages/python-burrito/trunk/debian/patches/better_error_reporting 2015-07-29 12:36:30 UTC (rev 19742)
@@ -0,0 +1,20 @@
+--- a/burrito/util.py
++++ b/burrito/util.py
+@@ -296,10 +296,15 @@
+ result = \
+ CommandLineAppResult(out, err, exit_status,
+ result_paths=result_paths)
+- except ApplicationError:
+- result = \
++ except ApplicationError as e1:
++ try:
++ result = \
+ self._handle_app_result_build_failure(out, err, exit_status,
+ result_paths)
++ except ApplicationError:
++ #If the handler just throws an error then report the first error,
++ #not the new error.
++ raise e1
+
+ # Clean up the input file if one was created
+ if remove_tmp:
Added: trunk/packages/python-burrito/trunk/debian/patches/series
===================================================================
--- trunk/packages/python-burrito/trunk/debian/patches/series (rev 0)
+++ trunk/packages/python-burrito/trunk/debian/patches/series 2015-07-29 12:36:30 UTC (rev 19742)
@@ -0,0 +1 @@
+better_error_reporting
Added: trunk/packages/python-burrito/trunk/debian/rules
===================================================================
--- trunk/packages/python-burrito/trunk/debian/rules (rev 0)
+++ trunk/packages/python-burrito/trunk/debian/rules 2015-07-29 12:36:30 UTC (rev 19742)
@@ -0,0 +1,13 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+PKG := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p')
+
+# At the moment only build for Py2 because QIIME only works with Py2
+
+%:
+ dh $@ --with python2 --buildsystem=pybuild
+
Property changes on: trunk/packages/python-burrito/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/python-burrito/trunk/debian/source/format
===================================================================
--- trunk/packages/python-burrito/trunk/debian/source/format (rev 0)
+++ trunk/packages/python-burrito/trunk/debian/source/format 2015-07-29 12:36:30 UTC (rev 19742)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/python-burrito/trunk/debian/watch
===================================================================
--- trunk/packages/python-burrito/trunk/debian/watch (rev 0)
+++ trunk/packages/python-burrito/trunk/debian/watch 2015-07-29 12:36:30 UTC (rev 19742)
@@ -0,0 +1,2 @@
+version=3
+https://pypi.python.org/pypi/burrito .*/burrito-([0-9.]+).tar.[xgb]z2?
More information about the debian-med-commit
mailing list