[med-svn] r19763 - in trunk/packages/R/r-bioc-aroma.light/trunk/debian: . tests

[Andreas Tille]

Author: tille
Date: 2015-07-29 16:51:30 +0000 (Wed, 29 Jul 2015)
New Revision: 19763

Added:
   trunk/packages/R/r-bioc-aroma.light/trunk/debian/README.test
   trunk/packages/R/r-bioc-aroma.light/trunk/debian/docs
   trunk/packages/R/r-bioc-aroma.light/trunk/debian/tests/
   trunk/packages/R/r-bioc-aroma.light/trunk/debian/tests/control
   trunk/packages/R/r-bioc-aroma.light/trunk/debian/tests/run-unit-test
Modified:
   trunk/packages/R/r-bioc-aroma.light/trunk/debian/rules
Log:
Images in usr/share, autopkgtest


Added: trunk/packages/R/r-bioc-aroma.light/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-bioc-aroma.light/trunk/debian/README.test	                        (rev 0)
+++ trunk/packages/R/r-bioc-aroma.light/trunk/debian/README.test	2015-07-29 16:51:30 UTC (rev 19763)
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+To run the unit tests provided by the package you can do
+
+   sh run-unit-test
+
+in this directory.

Added: trunk/packages/R/r-bioc-aroma.light/trunk/debian/docs
===================================================================
--- trunk/packages/R/r-bioc-aroma.light/trunk/debian/docs	                        (rev 0)
+++ trunk/packages/R/r-bioc-aroma.light/trunk/debian/docs	2015-07-29 16:51:30 UTC (rev 19763)
@@ -0,0 +1,3 @@
+debian/README.test
+debian/tests/run-unit-test
+tests
\ No newline at end of file

Modified: trunk/packages/R/r-bioc-aroma.light/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-aroma.light/trunk/debian/rules	2015-07-29 15:34:58 UTC (rev 19762)
+++ trunk/packages/R/r-bioc-aroma.light/trunk/debian/rules	2015-07-29 16:51:30 UTC (rev 19763)
@@ -2,3 +2,10 @@
 
 debRreposname=bioc
 include /usr/share/R/debian/r-cran.mk
+
+install/$(package)::
+	mkdir -p debian/$(package)/usr/share/pixmaps/$(cranName)
+	for png in `find debian/$(package)/usr/lib/R/site-library/$(cranName) -name "*.png"` ; do \
+	    mv $${png} debian/$(package)/usr/share/pixmaps/$(cranName) ; \
+	    ln -s /usr/share/pixmaps/$(cranName)/`basename $${png}` $${png} ; \
+	done

Added: trunk/packages/R/r-bioc-aroma.light/trunk/debian/tests/control
===================================================================
--- trunk/packages/R/r-bioc-aroma.light/trunk/debian/tests/control	                        (rev 0)
+++ trunk/packages/R/r-bioc-aroma.light/trunk/debian/tests/control	2015-07-29 16:51:30 UTC (rev 19763)
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr

Added: trunk/packages/R/r-bioc-aroma.light/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-bioc-aroma.light/trunk/debian/tests/run-unit-test	                        (rev 0)
+++ trunk/packages/R/r-bioc-aroma.light/trunk/debian/tests/run-unit-test	2015-07-29 16:51:30 UTC (rev 19763)
@@ -0,0 +1,20 @@
+#!/bin/sh -e
+oname=aroma.light
+pkg=r-bioc-`echo $oname | tr [A-Z] [a-z]`
+
+if [ "$ADTTMP" = "" ] ; then
+  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp /usr/share/doc/$pkg/examples/vignettes/* $ADTTMP
+find . -name "*.gz" -exec gunzip \{\} \;
+for runtest in `ls *.R` ; do
+   LC_ALL=C R --no-save < $runtest >/dev/null
+   if [ ! $? ] ; then
+     echo "Test ${runtest} failed"
+     exit 1
+   else
+     echo "Test ${runtest} passed"
+   fi
+done
+# rm -rf *