[med-svn] [blasr] 03/12: Add 'See Also' sections

[Afif Elghraoui]

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afif-guest pushed a commit to branch master
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commit 9285230161700452a316fc4e7592e24fa1aa1763
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Wed Jul 29 22:18:18 2015 -0700

    Add 'See Also' sections
---
 debian/blasr.1      | 9 +++++++++
 debian/loadPulses.1 | 9 +++++++++
 debian/pls2fasta.1  | 9 +++++++++
 debian/samFilter.1  | 9 +++++++++
 debian/samtoh5.1    | 9 +++++++++
 debian/samtom4.1    | 9 +++++++++
 debian/sawriter.1   | 9 +++++++++
 debian/sdpMatcher.1 | 9 +++++++++
 debian/toAfg.1      | 9 +++++++++
 9 files changed, 81 insertions(+)

diff --git a/debian/blasr.1 b/debian/blasr.1
index cd2f279..45693ea 100644
--- a/debian/blasr.1
+++ b/debian/blasr.1
@@ -441,3 +441,12 @@ single molecule sequencing reads using Basic Local Alignment with
 Successive Refinement (BLASR): Theory and Application, BMC
 Bioinformatics 2012, 13:238.
 Please report any bugs to 'https://github.com/PacificBiosciences/blasr/issues'.
+.SH SEE ALSO
+.BR loadPulses (1)
+.BR pls2fasta (1)
+.BR samFilter (1)
+.BR samtoh5 (1)
+.BR samtom4 (1)
+.BR sawriter (1)
+.BR sdpMatcher (1)
+.BR toAfg (1)
diff --git a/debian/loadPulses.1 b/debian/loadPulses.1
index 76184a9..be6d5e9 100644
--- a/debian/loadPulses.1
+++ b/debian/loadPulses.1
@@ -70,3 +70,12 @@ bas/bax/pls.h5 file.
 .IP
 Set chunk size of raw data cache for reading bas/bax/pls.h5
 file.
+.SH SEE ALSO
+.BR blasr (1)
+.BR pls2fasta (1)
+.BR samFilter (1)
+.BR samtoh5 (1)
+.BR samtom4 (1)
+.BR sawriter (1)
+.BR sdpMatcher (1)
+.BR toAfg (1)
diff --git a/debian/pls2fasta.1 b/debian/pls2fasta.1
index d74f19b..64ad554 100644
--- a/debian/pls2fasta.1
+++ b/debian/pls2fasta.1
@@ -74,3 +74,12 @@ Otherwise, print the
 .TP
 longestsubread.
 This does not support fastq.
+.SH SEE ALSO
+.BR blasr (1)
+.BR loadPulses (1)
+.BR samFilter (1)
+.BR samtoh5 (1)
+.BR samtom4 (1)
+.BR sawriter (1)
+.BR sdpMatcher (1)
+.BR toAfg (1)
diff --git a/debian/samFilter.1 b/debian/samFilter.1
index fdff34e..dc0aab8 100644
--- a/debian/samFilter.1
+++ b/debian/samFilter.1
@@ -128,3 +128,12 @@ When "\-smrtTitle" is specified, the xs tag is ignored, but when it is not
 specified, the coordinates given by the xs and xe tags are used to define
 the interval of a read that is aligned.  The CIGAR string is relative to
 this interval.
+.SH SEE ALSO
+.BR blasr (1)
+.BR loadPulses (1)
+.BR pls2fasta (1)
+.BR samtoh5 (1)
+.BR samtom4 (1)
+.BR sawriter (1)
+.BR sdpMatcher (1)
+.BR toAfg (1)
diff --git a/debian/samtoh5.1 b/debian/samtoh5.1
index 3ba6034..3c6b0a1 100644
--- a/debian/samtoh5.1
+++ b/debian/samtoh5.1
@@ -54,3 +54,12 @@ When "\-smrtTitle" is specified, the xs tag is ignored, but when it is not
 specified, the coordinates given by the xs and xe tags are used to define
 the interval of a read that is aligned. The CIGAR string is relative to
 this interval.
+.SH SEE ALSO
+.BR blasr (1)
+.BR loadPulses (1)
+.BR pls2fasta (1)
+.BR samFilter (1)
+.BR samtom4 (1)
+.BR sawriter (1)
+.BR sdpMatcher (1)
+.BR toAfg (1)
diff --git a/debian/samtom4.1 b/debian/samtom4.1
index 84f8e33..033e2ce 100644
--- a/debian/samtom4.1
+++ b/debian/samtom4.1
@@ -27,3 +27,12 @@ Print M4 header.
 .IP
 Use abbreviated reference names obtained from file.sam instead
 of using full names from reference.fasta.
+.SH SEE ALSO
+.BR blasr (1)
+.BR loadPulses (1)
+.BR pls2fasta (1)
+.BR samFilter (1)
+.BR samtoh5 (1)
+.BR sawriter (1)
+.BR sdpMatcher (1)
+.BR toAfg (1)
diff --git a/debian/sawriter.1 b/debian/sawriter.1
index 5d276b6..a546e69 100644
--- a/debian/sawriter.1
+++ b/debian/sawriter.1
@@ -37,3 +37,12 @@ normal larsson.
 .TP
 \fB\-welterweight\fR N use a difference cover of size N for building the suffix array.
 Valid values are 7,32,64,111, and 2281.
+.SH SEE ALSO
+.BR blasr (1)
+.BR loadPulses (1)
+.BR pls2fasta (1)
+.BR samFilter (1)
+.BR samtoh5 (1)
+.BR samtom4 (1)
+.BR sdpMatcher (1)
+.BR toAfg (1)
diff --git a/debian/sdpMatcher.1 b/debian/sdpMatcher.1
index ead9ff8..64378df 100644
--- a/debian/sdpMatcher.1
+++ b/debian/sdpMatcher.1
@@ -4,3 +4,12 @@
 sdpMatcher \- description of program
 .SH DESCRIPTION
 usage: sdpMatcher query target k [\-indelRate delta] [\-showalign] [\-printsw] [\-noRefine] [\-indel i] [ \fB\-local\fR ] [\-match m] [\-sdpIndel i]
+.SH SEE ALSO
+.BR blasr (1)
+.BR loadPulses (1)
+.BR pls2fasta (1)
+.BR samFilter (1)
+.BR samtoh5 (1)
+.BR samtom4 (1)
+.BR sawriter (1)
+.BR toAfg (1)
diff --git a/debian/toAfg.1 b/debian/toAfg.1
index 531d5a2..19511ac 100644
--- a/debian/toAfg.1
+++ b/debian/toAfg.1
@@ -12,3 +12,12 @@ usage: toAfg input.filetype output.filetype
 [\-uniformQV QV]
 .PP
 Print reads stored in a file (pls|fasta|fastq) as an afg.
+.SH SEE ALSO
+.BR blasr (1)
+.BR loadPulses (1)
+.BR pls2fasta (1)
+.BR samFilter (1)
+.BR samtoh5 (1)
+.BR samtom4 (1)
+.BR sawriter (1)
+.BR sdpMatcher (1)

-- 
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