[med-svn] [blasr] 05/12: Finalize manpage for sdpMatcher

[Afif Elghraoui]

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commit e4e9c118bca3de23827a5272bde0d3fe0c158a7d
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Wed Jul 29 22:43:58 2015 -0700

    Finalize manpage for sdpMatcher
    
    Use information from source code to populate the Description
    section.
---
 debian/sdpMatcher.1 | 24 +++++++++++++++++++++---
 1 file changed, 21 insertions(+), 3 deletions(-)

diff --git a/debian/sdpMatcher.1 b/debian/sdpMatcher.1
index 64378df..f012463 100644
--- a/debian/sdpMatcher.1
+++ b/debian/sdpMatcher.1
@@ -1,9 +1,27 @@
-.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.46.4.
 .TH SDPMATCHER "1" "July 2015" "sdpMatcher 3ca7fe8" "User Commands"
 .SH NAME
-sdpMatcher \- description of program
+sdpMatcher \- nucleotide sequence matching using sparse dynamic programming
+.SH SYNOPSIS
+.B sdpMatcher
+.I query
+.I target
+.I k
+.RB [ \-indelRate
+.IR delta ]
+.RB [ \-showalign ]
+.RB [ \-printsw ]
+.RB [ \-noRefine ]
+.RB [ \-indel
+.IR i ]
+.RB [ \-local ]
+.RB [ \-match
+.IR m ]
+.RB [ \-sdpIndel
+.IR i ]
 .SH DESCRIPTION
-usage: sdpMatcher query target k [\-indelRate delta] [\-showalign] [\-printsw] [\-noRefine] [\-indel i] [ \fB\-local\fR ] [\-match m] [\-sdpIndel i]
+Performs sparse dynamic programming (SDP) between pairs of sequences as they 
+are given in two FASTA files, called \fIquery\fR and \fItarget\fR for
+convenience. \fIk\fR is the size of the k-mer used for the SDP algorithm.
 .SH SEE ALSO
 .BR blasr (1)
 .BR loadPulses (1)

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