[med-svn] [gmap] 02/04: Merge tag 'upstream/2014-12-29'

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository gmap.

commit 3510630e89e006090d722a29513073d60fb49184
Merge: 77f6dee 15c4dbd
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Mon Jun 1 15:13:04 2015 +0200

    Merge tag 'upstream/2014-12-29'
    
    Upstream version 2014-12-29

 ChangeLog       |   60 ++
 VERSION         |    2 +-
 configure       |   24 +-
 src/chimera.c   |    3 +-
 src/iit-read.c  |   64 +-
 src/list.c      |   16 +-
 src/list.h      |    3 +-
 src/pair.c      |   48 +-
 src/pair.h      |    4 +-
 src/stage3hr.c  | 2422 +++++++++++++++++++++++++++++++++++++++++--------------
 src/substring.c |  105 ++-
 src/substring.h |   17 +-
 12 files changed, 2049 insertions(+), 719 deletions(-)

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