[med-svn] [plip] 01/04: d/watch: d/plipcmd.1: man page for plipcmd

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
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commit e8e4d26216d3adaae9659dee419a913b706e8fc6
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Thu Jun 4 18:14:30 2015 +0200

    d/watch:
    d/plipcmd.1: man page for plipcmd
---
 debian/plipcmd.1 | 39 +++++++++++++++++++++++++++++++++++++++
 debian/watch     |  3 +++
 2 files changed, 42 insertions(+)

diff --git a/debian/plipcmd.1 b/debian/plipcmd.1
new file mode 100644
index 0000000..9dde918
--- /dev/null
+++ b/debian/plipcmd.1
@@ -0,0 +1,39 @@
+.TH PLIPCMD "1" "June 2015" "plipcmd 1.1.0" "User Commands"
+.SH NAME
+plipcmd - tool to analyze and visualize protein-ligand interactions in PDB files.
+.SH SYNOPSIS
+plipcmd [\-h] (\fB\-f\fR INPUT | \fB\-i\fR PDBID) [\-o OUTPATH] [\-v] [\-p] [\-x] [\-y]
+.IP
+[\-\-maxthreads MAXTHREADS]
+.SH DESCRIPTION
+.PP
+Protein\-Ligand Interaction Profiler (PLIP) v1.1.0 is a command\-line based tool
+to analyze interactions in a protein\-ligand complex. If you are using PLIP in
+your work, please cite: Salentin,S. et al. PLIP: fully automated proteinligand interaction profiler. Nucl. Acids Res. first published online April 14,
+2015 doi:10.1093/nar/gkv315
+.SH OPTIONS
+.TP
+\fB\-h\fR, \fB\-\-help\fR
+show this help message and exit
+.HP
+\fB\-f\fR INPUT, \fB\-\-file\fR INPUT
+.HP
+\fB\-i\fR PDBID, \fB\-\-input\fR PDBID
+.HP
+\fB\-o\fR OUTPATH, \fB\-\-out\fR OUTPATH
+.TP
+\fB\-v\fR, \fB\-\-verbose\fR
+Set verbose mode
+.TP
+\fB\-p\fR, \fB\-\-pics\fR
+Additional pictures
+.TP
+\fB\-x\fR, \fB\-\-xml\fR
+Additional XML output for reports
+.TP
+\fB\-y\fR, \fB\-\-pymol\fR
+Additional PyMOL session files
+.TP
+\fB\-\-maxthreads\fR MAXTHREADS
+Set maximum number of main threads (number of binding
+sites processed simultaneously)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..91a990f
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+opts=uversionmangle=s/(\d)[_\.\-\+]?((RC|rc|pre|dev|beta|alpha)\d*)$/$1~$2/,filenamemangle=s/.+\/v?(\d\S*)\.tar\.gz/plip-$1\.tar\.gz/ \
+  https://github.com/ssalentin/plip/tags .*/v?(\d\S*)\.tar\.gz

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